Šimek K., Nedoma J., Znachor P., Kasalický V., Jezbera J., Horňák K., Seďa J. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnol.Oceanogr. 59: 1477–1492.
Znachor P., Rychtecký P., Nedoma J., Visocká V. 2013. Spatial heterogeneity of diatom silicification and growth in a eutrophic reservoir. Freshwater Biol. 58: 1889–1902.
Znachor P., Nedoma J. 2010. Importance of dissolved organic carbon for phytoplankton nutrition in a eutrophic reservoir. J. Plankton Res. 32: 367–376.
Horňák, K., Jezbera, J., Šimek, K. 2010. Bacterial single-cell activities along the nutrient availability gradient in a canyon-shaped reservoir: a seasonal study. Aquat.Microb. Ecol. 60: 215–225.
Znachor P., Zapomnělová E., Řeháková K., Nedoma J., Šimek K. 2008. The effect of extreme rainfall on summer succession and vertical distribution of phytoplankton in a lacustrine part of a eutrophic reservoir.Aquat. Sci. 70: 77–86.
Šimek K., Horňák K., Jezbera J., Nedoma J., Znachor P., Hejzlar J., Seďa J. 2008: Spatial temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistanbacterivory in a dam reservoir. Aquat.Microb. Ecol. 51: 249–262.
Šimek K., Horňák K., Jezbera J., Nedoma J., Vrba J., Straškrábová V., Macek M., Dolan J.R., Hahn M.W. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environ. Microbiol. 8: 1613–1624.
Horňák K., Mašín M., Jezbera J., Bettarel Y., Nedoma J., Sime-Ngando T., Šimek K. 2005. Effects of decreased resource availability, protozoa grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir.FEMS Microbiol. Ecol. 52: 315–327.
Štrojsová A., Vrba J., Nedoma J., Komárková J., Znachor P. 2003. Seasonal study on expression of extracellular phosphatases in the phytoplankton of a eutrophic reservoir. Eur. J. Phycol. 38: 295–306.
Mašín M., Jezbera J., Nedoma J., Straškrábová V., Hejzlar J., Šimek K. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading.Hydrobiologia 504: 99–113.
Komárková J., Komárek O., Hejzlar J. 2003. Evaluation of the long-term monitoring of phytoplankton assemblages in a canyon-shape reservoir using multivariate statistic methods.Hydrobiologia 504: 143–157.
Jezbera J., Nedoma J., Šimek K. 2003. Longitudinal changes in protistanbacterivory and bacterial production in two canyon-shaped reservoirs of different trophic status. Hydrobiologia 504: 115–130.